Commit d0f5e837 authored by Peter van 't Hof's avatar Peter van 't Hof

Fix config value name

parent 5ff67b19
......@@ -213,7 +213,7 @@ class GatkVariantcalling(val root: Configurable) extends QScript with BiopetQScr
}
add(baseRecalibrator)
if (config("use_Analyze_covariates", default = false).getBoolean) {
if (config("use_analyze_covariates", default = false).getBoolean) {
val baseRecalibratorAfter = BaseRecalibrator(this, inputBam, swapExt(dir, inputBam, ".bam", ".baserecal.after"))
baseRecalibratorAfter.BQSR = baseRecalibrator.o
add(baseRecalibratorAfter)
......
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