Commit d0f5e837 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix config value name

parent 5ff67b19
......@@ -213,7 +213,7 @@ class GatkVariantcalling(val root: Configurable) extends QScript with BiopetQScr
if (config("use_Analyze_covariates", default = false).getBoolean) {
if (config("use_analyze_covariates", default = false).getBoolean) {
val baseRecalibratorAfter = BaseRecalibrator(this, inputBam, swapExt(dir, inputBam, ".bam", ".baserecal.after"))
baseRecalibratorAfter.BQSR = baseRecalibrator.o
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment