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biopet.biopet
Commits
cefa43a5
Commit
cefa43a5
authored
Feb 03, 2017
by
Peter van 't Hof
Committed by
GitHub
Feb 03, 2017
Browse files
Merge pull request #18 from biopet/fix-BIOPET-558
Fix write dependencies
parents
aea6651a
6569f666
Changes
1
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Inline
Side-by-side
biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/WriteDependencies.scala
View file @
cefa43a5
...
...
@@ -116,11 +116,11 @@ object WriteDependencies extends Logging with Configurable {
case
s
:
WriteSummary
if
s.qscript.root
=
=
null
=>
true
case
_
=>
false
}),
"intermediate"
->
f
.
isIntermediate
,
"depends_on_intermediate"
->
BiopetQScript
.
safe
Out
puts
(
f
).
getOrElse
(
Seq
()).
exists
(
files
(
_
).
isIntermediate
),
"depends_on_jobs"
->
BiopetQScript
.
safe
Out
puts
(
f
).
getOrElse
(
Seq
()).
toList
.
flatMap
(
files
(
_
).
outputJobNames
).
distinct
,
"depends_on_intermediate"
->
BiopetQScript
.
safe
In
puts
(
f
).
getOrElse
(
Seq
()).
exists
(
files
(
_
).
isIntermediate
),
"depends_on_jobs"
->
BiopetQScript
.
safe
In
puts
(
f
).
getOrElse
(
Seq
()).
toList
.
flatMap
(
files
(
_
).
outputJobNames
).
distinct
,
"output_used_by_jobs"
->
BiopetQScript
.
safeOutputs
(
f
).
getOrElse
(
Seq
()).
toList
.
flatMap
(
files
(
_
).
inputJobNames
).
distinct
,
"outputs"
->
(
f
.
jobOutputFile
::
BiopetQScript
.
safeOutputs
(
f
).
getOrElse
(
Seq
()).
toList
),
"inputs"
->
BiopetQScript
.
safe
Out
puts
(
f
).
getOrElse
(
Seq
()).
toList
,
"inputs"
->
BiopetQScript
.
safe
In
puts
(
f
).
getOrElse
(
Seq
()).
toList
,
"done_files"
->
BiopetQScript
.
safeDoneFiles
(
f
).
getOrElse
(
Seq
()).
toList
,
"fail_files"
->
BiopetQScript
.
safeFailFiles
(
f
).
getOrElse
(
Seq
()).
toList
,
"stdout_file"
->
f
.
jobOutputFile
,
...
...
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