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biopet.biopet
Commit cc77bd23 authored by Peter van 't Hof's avatar Peter van 't Hof
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Improve typing

parent c549917d
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Showing with 33 additions and 29 deletions
biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/summary/SummaryDb.scala
View file @ cc77bd23
......@@ -126,26 +126,28 @@ class SummaryDb(db: Database) {
def getStats(runId: Option[Int] = None, pipelineId: Option[Int] = None, moduleId: Option[Option[Int]] = None,
sampleId: Option[Option[Int]] = None, libId: Option[Option[Int]] = None) = {
val q = List(
runId.map(x => (y:Query[Stats, Stats#TableElementType, Seq]) => y.filter(_.runId === x)),
pipelineId.map(x => (y:Query[Stats, Stats#TableElementType, Seq]) => y.filter(_.pipelineId === x)),
moduleId.map(x => (y:Query[Stats, Stats#TableElementType, Seq]) => (if (x.isDefined) y.filter(_.moduleId === x) else y.filter(_.moduleId.isEmpty))),
sampleId.map(x => (y:Query[Stats, Stats#TableElementType, Seq]) => (if (x.isDefined) y.filter(_.sampleId === x) else y.filter(_.sampleId.isEmpty))),
libId.map(x => (y:Query[Stats, Stats#TableElementType, Seq]) => (if (x.isDefined) y.filter(_.libraryId === x) else y.filter(_.libraryId.isEmpty)))
).flatten.foldLeft(stats.subquery)((a,b) => b(a))
val l: List[Option[Query[Stats, Stats#TableElementType, Seq] => Query[Stats, Stats#TableElementType, Seq]]] = List(
runId.map(x => y => y.filter(_.runId === x)),
pipelineId.map(x => y => y.filter(_.pipelineId === x)),
moduleId.map(x => y => (if (x.isDefined) y.filter(_.moduleId === x) else y.filter(_.moduleId.isEmpty))),
sampleId.map(x => y => (if (x.isDefined) y.filter(_.sampleId === x) else y.filter(_.sampleId.isEmpty))),
libId.map(x => y => (if (x.isDefined) y.filter(_.libraryId === x) else y.filter(_.libraryId.isEmpty)))
)
val q = l.flatten.foldLeft(stats.subquery)((a,b) => b(a))
db.run(q.result)
}
def getStat(runId: Int, pipelineId: Int, moduleId: Option[Int] = None,
sampleId: Option[Int] = None, libId: Option[Int] = None): Future[Option[Map[String, Any]]] = {
val q = List(
(y:Query[Stats, Stats#TableElementType, Seq]) => y.filter(_.runId === runId),
(y:Query[Stats, Stats#TableElementType, Seq]) => y.filter(_.pipelineId === pipelineId),
(y:Query[Stats, Stats#TableElementType, Seq]) => (if (moduleId.isDefined) y.filter(_.moduleId === moduleId) else y.filter(_.moduleId.isEmpty)),
(y:Query[Stats, Stats#TableElementType, Seq]) => (if (sampleId.isDefined) y.filter(_.sampleId === sampleId) else y.filter(_.sampleId.isEmpty)),
(y:Query[Stats, Stats#TableElementType, Seq]) => (if (libId.isDefined) y.filter(_.libraryId === libId) else y.filter(_.libraryId.isEmpty))
).foldLeft(stats.subquery)((a,b) => b(a))
val l: List[Query[Stats, Stats#TableElementType, Seq] => Query[Stats, Stats#TableElementType, Seq]] = List(
y => y.filter(_.runId === runId),
y => y.filter(_.pipelineId === pipelineId),
y => (if (moduleId.isDefined) y.filter(_.moduleId === moduleId) else y.filter(_.moduleId.isEmpty)),
y => (if (sampleId.isDefined) y.filter(_.sampleId === sampleId) else y.filter(_.sampleId.isEmpty)),
y => (if (libId.isDefined) y.filter(_.libraryId === libId) else y.filter(_.libraryId.isEmpty))
)
val q = l.foldLeft(stats.subquery)((a,b) => b(a))
db.run(q.map(_.content).result).map(_.headOption.map(ConfigUtils.jsonTextToMap))
}
......@@ -157,27 +159,29 @@ class SummaryDb(db: Database) {
def getSettings(runId: Option[Int] = None, pipelineId: Option[Int] = None, moduleId: Option[Option[Int]] = None,
sampleId: Option[Option[Int]] = None, libId: Option[Option[Int]] = None) = {
val q = List(
runId.map(x => (y:Query[Settings, Settings#TableElementType, Seq]) => y.filter(_.runId === x)),
pipelineId.map(x => (y:Query[Settings, Settings#TableElementType, Seq]) => y.filter(_.pipelineId === x)),
moduleId.map(x => (y:Query[Settings, Settings#TableElementType, Seq]) => (if (x.isDefined) y.filter(_.moduleId === x) else y.filter(_.moduleId.isEmpty))),
sampleId.map(x => (y:Query[Settings, Settings#TableElementType, Seq]) => (if (x.isDefined) y.filter(_.sampleId === x) else y.filter(_.sampleId.isEmpty))),
libId.map(x => (y:Query[Settings, Settings#TableElementType, Seq]) => (if (x.isDefined) y.filter(_.libraryId === x) else y.filter(_.libraryId.isEmpty)))
).flatten.foldLeft(settings.subquery)((a,b) => b(a))
val l: List[Option[Query[Settings, Settings#TableElementType, Seq] => Query[Settings, Settings#TableElementType, Seq]]] = List(
runId.map(x => y => y.filter(_.runId === x)),
pipelineId.map(x => y => y.filter(_.pipelineId === x)),
moduleId.map(x => y => (if (x.isDefined) y.filter(_.moduleId === x) else y.filter(_.moduleId.isEmpty))),
sampleId.map(x => y => (if (x.isDefined) y.filter(_.sampleId === x) else y.filter(_.sampleId.isEmpty))),
libId.map(x => y => (if (x.isDefined) y.filter(_.libraryId === x) else y.filter(_.libraryId.isEmpty)))
)
val q = l.flatten.foldLeft(settings.subquery)((a,b) => b(a))
db.run(q.result)
}
def getSetting(runId: Int, pipelineId: Int, moduleId: Option[Int] = None,
sampleId: Option[Int] = None, libId: Option[Int] = None): Future[Option[Map[String, Any]]] = {
val q = List(
(y:Query[Settings, Settings#TableElementType, Seq]) => y.filter(_.runId === runId),
(y:Query[Settings, Settings#TableElementType, Seq]) => y.filter(_.pipelineId === pipelineId),
(y:Query[Settings, Settings#TableElementType, Seq]) => (if (moduleId.isDefined) y.filter(_.moduleId === moduleId) else y.filter(_.moduleId.isEmpty)),
(y:Query[Settings, Settings#TableElementType, Seq]) => (if (sampleId.isDefined) y.filter(_.sampleId === sampleId) else y.filter(_.sampleId.isEmpty)),
(y:Query[Settings, Settings#TableElementType, Seq]) => (if (libId.isDefined) y.filter(_.libraryId === libId) else y.filter(_.libraryId.isEmpty))
).foldLeft(settings.subquery)((a,b) => b(a))
val l: List[Query[Settings, Settings#TableElementType, Seq] => Query[Settings, Settings#TableElementType, Seq]] = List(
_.filter(_.runId === runId),
_.filter(_.pipelineId === pipelineId),
y => (if (moduleId.isDefined) y.filter(_.moduleId === moduleId) else y.filter(_.moduleId.isEmpty)),
y => (if (sampleId.isDefined) y.filter(_.sampleId === sampleId) else y.filter(_.sampleId.isEmpty)),
y => (if (libId.isDefined) y.filter(_.libraryId === libId) else y.filter(_.libraryId.isEmpty))
)
val q = l.foldLeft(settings.subquery)((a,b) => b(a))
db.run(q.map(_.content).result).map(_.headOption.map(ConfigUtils.jsonTextToMap))
}
......
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