Typo

cc5db58a · pjvan_thof · 8db9bc07 · cc5db58a
Commit cc5db58a authored Jul 11, 2017 by pjvan_thof
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/somatic/MuTect2.scala ...opet/pipelines/shiva/variantcallers/somatic/MuTect2.scala +1 -1

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--- a/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/somatic/MuTect2.scala
+++ b/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/somatic/MuTect2.scala
@@ -19,7 +19,7 @@ class MuTect2(val parent: Configurable) extends SomaticVariantCaller {

  def biopetScript(): Unit = {

-    if (tnPairs.isEmpty) Logging.addError("No tumor-normal found in conig")
+    if (tnPairs.isEmpty) Logging.addError("No tumor-normal found in config")
    val outputFiles = for (pair <- tnPairs) yield {

      val bqsrFile =