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biopet.biopet
Commits
cc5db58a
Commit
cc5db58a
authored
Jul 11, 2017
by
pjvan_thof
Browse files
Typo
parent
8db9bc07
Changes
1
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Inline
Side-by-side
shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/somatic/MuTect2.scala
View file @
cc5db58a
...
...
@@ -19,7 +19,7 @@ class MuTect2(val parent: Configurable) extends SomaticVariantCaller {
def
biopetScript
()
:
Unit
=
{
if
(
tnPairs
.
isEmpty
)
Logging
.
addError
(
"No tumor-normal found in conig"
)
if
(
tnPairs
.
isEmpty
)
Logging
.
addError
(
"No tumor-normal found in con
f
ig"
)
val
outputFiles
=
for
(
pair
<-
tnPairs
)
yield
{
val
bqsrFile
=
...
...
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