Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
cbd353da
Commit
cbd353da
authored
Mar 27, 2017
by
Peter van 't Hof
Browse files
Remove unused code
parent
6f02f6d8
Changes
1
Show whitespace changes
Inline
Side-by-side
shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
View file @
cbd353da
...
...
@@ -105,16 +105,6 @@ trait ShivaReportTrait extends MultisampleMappingReportTrait {
else
None
}
/** Files page, can be used general or at sample level */
//TODO: fix files pages
// override def filesPage(sampleId: Option[Int] = None, libraryId: Option[Int] = None): ReportPage = {
// val vcfFilesSection = if (variantcallingExecuted) List("VCF files" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/shiva/outputVcfFiles.ssp",
// Map("sampleId" -> sampleId)))
// else Nil
// val oldPage = super.filesPage(sampleId, libraryId)
// oldPage.copy(sections = oldPage.sections ++ vcfFilesSection)
// }
/** Single sample page */
override
def
samplePage
(
sampleId
:
Int
,
args
:
Map
[
String
,
Any
])
:
ReportPage
=
{
val
variantcallingSection
=
if
(
variantcallingExecuted
)
List
(
"Variantcalling"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/shiva/sampleVariants.ssp"
))
else
Nil
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment