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biopet.biopet
Commits
ca9d7529
Commit
ca9d7529
authored
Mar 01, 2017
by
Peter van 't Hof
Browse files
Fix compile error
parent
12a6539a
Changes
1
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
View file @
ca9d7529
...
...
@@ -104,11 +104,11 @@ trait ShivaReportTrait extends MultisampleMappingReportTrait {
}
/** Files page, can be used general or at sample level */
override
def
filesPage
:
ReportPage
=
{
override
def
filesPage
(
sampleId
:
Option
[
Int
]
=
None
,
libraryId
:
Option
[
Int
]
=
None
)
:
ReportPage
=
{
val
vcfFilesSection
=
if
(
variantcallingExecuted
)
List
(
"VCF files"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/shiva/outputVcfFiles.ssp"
,
Map
(
"sampleId"
->
None
)))
else
Nil
val
oldPage
=
super
.
filesPage
val
oldPage
=
super
.
filesPage
(
sampleId
,
libraryId
)
oldPage
.
copy
(
sections
=
oldPage
.
sections
++
vcfFilesSection
)
}
...
...
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