Commit c99aa979 authored by Peter van 't Hof's avatar Peter van 't Hof Committed by GitHub
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Merge pull request #153 from biopet/fix-BIOPET-739

Fixing config value
parents d8f47fa1 c4008d0c
......@@ -58,7 +58,7 @@ All other values should be provided in the config. Specific config values toward
| readgroup_sequencing_center | String (optional) | Read group sequencing center |
| readgroup_description | String (optional) | Read group description |
| predicted_insertsize | Integer (optional) | Read group predicted insert size |
| keep_final_bam_file | Boolean (default true) | when needed the pipeline can remove the bam file after it's not required anymore for other jobs |
| keep_mapping_bam_file | Boolean (default true) | when needed the pipeline can remove the bam file after it's not required anymore for other jobs |
It is possible to provide any config value as a command line argument as well, using the `-cv` flag.
E.g. `-cv reference=<path/to/reference>` would set value `reference`.
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