Commit c962c575 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Style fix

parent 925f5b4d
package nl.lumc.sasc.biopet.pipelines.gears package nl.lumc.sasc.biopet.pipelines.gears
import nl.lumc.sasc.biopet.core.BiopetQScript import nl.lumc.sasc.biopet.core.BiopetQScript
import nl.lumc.sasc.biopet.extensions.qiime.{AssignTaxonomy, PickRepSet, PickOtus} import nl.lumc.sasc.biopet.extensions.qiime.{ AssignTaxonomy, PickRepSet, PickOtus }
import nl.lumc.sasc.biopet.utils.config.Configurable import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.queue.QScript import org.broadinstitute.gatk.queue.QScript
...@@ -24,8 +24,8 @@ class GearsQiimeRtax(val root: Configurable) extends QScript with BiopetQScript ...@@ -24,8 +24,8 @@ class GearsQiimeRtax(val root: Configurable) extends QScript with BiopetQScript
"pickotus" -> Map( "pickotus" -> Map(
"otu_picking_method" -> "uclust_ref", "otu_picking_method" -> "uclust_ref",
"suppress_new_clusters" -> true "suppress_new_clusters" -> true
)
) )
)
def init() = { def init() = {
require(fastaR1 != null) require(fastaR1 != null)
......
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