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biopet.biopet
Commits
c91a9617
Commit
c91a9617
authored
Nov 28, 2016
by
Sander Bollen
Browse files
fix a few arguments
parent
2052cfc3
Changes
1
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Inline
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/xhmm/XhmmMatrix.scala
View file @
c91a9617
...
...
@@ -71,8 +71,8 @@ class XhmmMatrix(val root: Configurable) extends Xhmm {
required
(
"--maxTargetSize"
,
maxTargetSize
)
+
required
(
"--minMeanTargetRD"
,
minMeanTargetRD
)
+
required
(
"--maxMeanTargetRD"
,
maxMeanTargetRD
)
+
required
(
"--minMeanSampleR
d
"
,
minMeanSampleRD
)
+
required
(
"--maxMeanSampleR
d
"
,
maxMeanSampleRD
)
+
required
(
"--minMeanSampleR
D
"
,
minMeanSampleRD
)
+
required
(
"--maxMeanSampleR
D
"
,
maxMeanSampleRD
)
+
required
(
"--maxSdSampleRD"
,
maxSdSampleRD
)
}
...
...
@@ -82,8 +82,8 @@ class XhmmMatrix(val root: Configurable) extends Xhmm {
executable
+
required
(
"--matrix"
)
+
required
(
"-r"
,
inputMatrix
)
+
required
(
"-o"
,
outputMatrix
)
+
optional
(
"--
e
xcludedTargets"
,
outputExcludedTargets
)
+
optional
(
"--
e
xcludedSamples"
,
outputExcludedSamples
)
+
subCmdLine
optional
(
"--
outputE
xcludedTargets"
,
outputExcludedTargets
)
+
optional
(
"--
outputE
xcludedSamples"
,
outputExcludedSamples
)
+
subCmdLine
}
}
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