Commit c91a9617 authored by Sander Bollen's avatar Sander Bollen

fix a few arguments

parent 2052cfc3
...@@ -71,8 +71,8 @@ class XhmmMatrix(val root: Configurable) extends Xhmm { ...@@ -71,8 +71,8 @@ class XhmmMatrix(val root: Configurable) extends Xhmm {
required("--maxTargetSize", maxTargetSize) + required("--maxTargetSize", maxTargetSize) +
required("--minMeanTargetRD", minMeanTargetRD) + required("--minMeanTargetRD", minMeanTargetRD) +
required("--maxMeanTargetRD", maxMeanTargetRD) + required("--maxMeanTargetRD", maxMeanTargetRD) +
required("--minMeanSampleRd", minMeanSampleRD) + required("--minMeanSampleRD", minMeanSampleRD) +
required("--maxMeanSampleRd", maxMeanSampleRD) + required("--maxMeanSampleRD", maxMeanSampleRD) +
required("--maxSdSampleRD", maxSdSampleRD) required("--maxSdSampleRD", maxSdSampleRD)
} }
...@@ -82,8 +82,8 @@ class XhmmMatrix(val root: Configurable) extends Xhmm { ...@@ -82,8 +82,8 @@ class XhmmMatrix(val root: Configurable) extends Xhmm {
executable + required("--matrix") + executable + required("--matrix") +
required("-r", inputMatrix) + required("-r", inputMatrix) +
required("-o", outputMatrix) + required("-o", outputMatrix) +
optional("--excludedTargets", outputExcludedTargets) + optional("--outputExcludedTargets", outputExcludedTargets) +
optional("--excludedSamples", outputExcludedSamples) + subCmdLine optional("--outputExcludedSamples", outputExcludedSamples) + subCmdLine
} }
} }
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