From c872ae7689202105c45473f5f69383824640176d Mon Sep 17 00:00:00 2001
From: Ioannis Moustakas <i.moustakas@lumc.nl>
Date: Wed, 6 Jul 2016 18:29:01 +0200
Subject: [PATCH] Add text to options parser
---
.../main/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstat.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstat.scala b/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstat.scala
index f51e717db..b363403a7 100644
--- a/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstat.scala
+++ b/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstat.scala
@@ -41,7 +41,7 @@ object BiopetFlagstat extends ToolCommand {
} text "summary output file"
opt[String]('r', "region") valueName "<chr:start-stop>" action { (x, c) =>
c.copy(region = Some(x))
- }
+ } text "Region to calculate the statistics on"
}
/**
--
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