Commit c7d7faa8 authored by Wai Yi Leung's avatar Wai Yi Leung
Browse files

Set defaults for Boolean values (missed the ignore_quals)

parent 1a27786b
......@@ -53,7 +53,7 @@ class Bowtie2(val root: Configurable) extends BiopetCommandLineFunction with Ref
var n_ceil: Option[String] = config("n_ceil")
var dpad: Option[Int] = config("dpad")
var gbar: Option[Int] = config("gbar")
var ignore_quals: Boolean = config("ignore_quals")
var ignore_quals: Boolean = config("ignore_quals", default=false)
var nofw: Boolean = config("nofw", default=false)
var norc: Boolean = config("norc", default=false)
var no_1mm_upfront: Boolean = config("no_1mm_upfront", default=false)
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