From c7b928d34ff9772848da6620225893c2b225d64f Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Fri, 3 Jul 2015 16:44:26 +0200
Subject: [PATCH] Fix code style warnings
---
protected/biopet-gatk-extensions/pom.xml | 1 -
protected/biopet-gatk-pipelines/pom.xml | 1 -
protected/biopet-protected-package/pom.xml | 4 +++-
public/bam2wig/pom.xml | 1 -
public/bammetrics/pom.xml | 1 -
public/basty/pom.xml | 1 -
public/biopet-framework/pom.xml | 1 -
public/biopet-public-package/pom.xml | 4 +++-
public/carp/pom.xml | 1 -
public/flexiprep/pom.xml | 1 -
public/gentrap/pom.xml | 1 -
public/kopisu/pom.xml | 1 -
public/mapping/pom.xml | 1 -
public/pom.xml | 4 ----
public/sage/pom.xml | 1 -
public/toucan/pom.xml | 1 -
public/yamsvp/pom.xml | 1 -
17 files changed, 6 insertions(+), 20 deletions(-)
diff --git a/protected/biopet-gatk-extensions/pom.xml b/protected/biopet-gatk-extensions/pom.xml
index acbffb3fc..b5c8d4258 100644
--- a/protected/biopet-gatk-extensions/pom.xml
+++ b/protected/biopet-gatk-extensions/pom.xml
@@ -9,7 +9,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetGatkExtensions</artifactId>
<packaging>jar</packaging>
diff --git a/protected/biopet-gatk-pipelines/pom.xml b/protected/biopet-gatk-pipelines/pom.xml
index a7803602f..c37217943 100644
--- a/protected/biopet-gatk-pipelines/pom.xml
+++ b/protected/biopet-gatk-pipelines/pom.xml
@@ -9,7 +9,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetGatkPipelines</artifactId>
<packaging>jar</packaging>
diff --git a/protected/biopet-protected-package/pom.xml b/protected/biopet-protected-package/pom.xml
index e694f75cc..e7db711a0 100644
--- a/protected/biopet-protected-package/pom.xml
+++ b/protected/biopet-protected-package/pom.xml
@@ -9,7 +9,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetProtectedPackage</artifactId>
<packaging>jar</packaging>
@@ -57,12 +56,15 @@
<artifactId>maven-shade-plugin</artifactId>
<version>2.3</version>
<configuration>
+ <!--suppress MavenModelInspection -->
<finalName>Biopet-${project.version}-${git.commit.id.abbrev}</finalName>
<transformers>
<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
<manifestEntries>
<Main-Class>${app.main.class}</Main-Class>
+ <!--suppress MavenModelInspection -->
<X-Compile-Source-JDK>${maven.compile.source}</X-Compile-Source-JDK>
+ <!--suppress MavenModelInspection -->
<X-Compile-Target-JDK>${maven.compile.target}</X-Compile-Target-JDK>
</manifestEntries>
</transformer>
diff --git a/public/bam2wig/pom.xml b/public/bam2wig/pom.xml
index 2020d86de..a4261de3b 100644
--- a/public/bam2wig/pom.xml
+++ b/public/bam2wig/pom.xml
@@ -21,7 +21,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>Bam2Wig</artifactId>
<packaging>jar</packaging>
diff --git a/public/bammetrics/pom.xml b/public/bammetrics/pom.xml
index b876611c2..693950726 100644
--- a/public/bammetrics/pom.xml
+++ b/public/bammetrics/pom.xml
@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>BamMetrics</artifactId>
<packaging>jar</packaging>
diff --git a/public/basty/pom.xml b/public/basty/pom.xml
index 4e9d0a303..fc4b45cb1 100644
--- a/public/basty/pom.xml
+++ b/public/basty/pom.xml
@@ -26,7 +26,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>Basty</artifactId>
<packaging>jar</packaging>
diff --git a/public/biopet-framework/pom.xml b/public/biopet-framework/pom.xml
index 360e07bb2..00b1aba31 100644
--- a/public/biopet-framework/pom.xml
+++ b/public/biopet-framework/pom.xml
@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetFramework</artifactId>
<packaging>jar</packaging>
diff --git a/public/biopet-public-package/pom.xml b/public/biopet-public-package/pom.xml
index 4209d9d80..44faf898c 100644
--- a/public/biopet-public-package/pom.xml
+++ b/public/biopet-public-package/pom.xml
@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetPublicPackage</artifactId>
<packaging>jar</packaging>
@@ -118,12 +117,15 @@
<artifactId>maven-shade-plugin</artifactId>
<version>2.3</version>
<configuration>
+ <!--suppress MavenModelInspection -->
<finalName>Biopet-${project.version}-${git.commit.id.abbrev}</finalName>
<transformers>
<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
<manifestEntries>
<Main-Class>${app.main.class}</Main-Class>
+ <!--suppress MavenModelInspection -->
<X-Compile-Source-JDK>${maven.compile.source}</X-Compile-Source-JDK>
+ <!--suppress MavenModelInspection -->
<X-Compile-Target-JDK>${maven.compile.target}</X-Compile-Target-JDK>
</manifestEntries>
</transformer>
diff --git a/public/carp/pom.xml b/public/carp/pom.xml
index 3e01cecbd..3eddeaa8e 100644
--- a/public/carp/pom.xml
+++ b/public/carp/pom.xml
@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>Carp</artifactId>
<packaging>jar</packaging>
diff --git a/public/flexiprep/pom.xml b/public/flexiprep/pom.xml
index 53cc99ebd..c90c50f83 100644
--- a/public/flexiprep/pom.xml
+++ b/public/flexiprep/pom.xml
@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>Flexiprep</artifactId>
<packaging>jar</packaging>
diff --git a/public/gentrap/pom.xml b/public/gentrap/pom.xml
index abfad9a31..507035468 100644
--- a/public/gentrap/pom.xml
+++ b/public/gentrap/pom.xml
@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>Gentrap</artifactId>
<packaging>jar</packaging>
diff --git a/public/kopisu/pom.xml b/public/kopisu/pom.xml
index 488912125..b6c048b7e 100644
--- a/public/kopisu/pom.xml
+++ b/public/kopisu/pom.xml
@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>Kopisu</artifactId>
<packaging>jar</packaging>
diff --git a/public/mapping/pom.xml b/public/mapping/pom.xml
index 3b2fb7aa0..e5d9ef8a4 100644
--- a/public/mapping/pom.xml
+++ b/public/mapping/pom.xml
@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>Mapping</artifactId>
<packaging>jar</packaging>
diff --git a/public/pom.xml b/public/pom.xml
index b679319fc..3bca89f3d 100644
--- a/public/pom.xml
+++ b/public/pom.xml
@@ -201,7 +201,6 @@
<failOnNoGitDirectory>false</failOnNoGitDirectory>
<abbrevLength>8</abbrevLength>
<skip>false</skip>
- <excludeProperties></excludeProperties>
<gitDescribe>
<skip>false</skip>
<always>false</always>
@@ -248,9 +247,6 @@
<groupId>org.scoverage</groupId>
<artifactId>scoverage-maven-plugin</artifactId>
<version>${scoverage.plugin.version}</version>
- <configuration>
- <outputDirectory>${basedir}/target/site/scoverage</outputDirectory>
- </configuration>
</plugin>
</plugins>
</reporting>
diff --git a/public/sage/pom.xml b/public/sage/pom.xml
index d7560c2bc..38a952cb2 100644
--- a/public/sage/pom.xml
+++ b/public/sage/pom.xml
@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>Sage</artifactId>
<packaging>jar</packaging>
diff --git a/public/toucan/pom.xml b/public/toucan/pom.xml
index 80111ad0c..9facd4c75 100644
--- a/public/toucan/pom.xml
+++ b/public/toucan/pom.xml
@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>Toucan</artifactId>
<packaging>jar</packaging>
diff --git a/public/yamsvp/pom.xml b/public/yamsvp/pom.xml
index 29211db91..c889547bc 100644
--- a/public/yamsvp/pom.xml
+++ b/public/yamsvp/pom.xml
@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>nl.lumc.sasc</groupId>
<artifactId>Yamsvp</artifactId>
<packaging>jar</packaging>
--
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