Commit c7847542 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix gatk shiva unit test

parent a21cf819
......@@ -54,7 +54,7 @@ class ShivaTest extends TestNGSuite with Matchers {
if (sample2) m = ConfigUtils.mergeMaps(ShivaTest.sample2, m)
if (sample3) m = ConfigUtils.mergeMaps(ShivaTest.sample3, m)
if (dbsnp) m = ConfigUtils.mergeMaps(Map("dbsnp" -> "test"), m)
ConfigUtils.mergeMaps(Map("multisample_sample_variantcalling" -> multi,
ConfigUtils.mergeMaps(Map("multisample_variantcalling" -> multi,
"single_sample_variantcalling" -> single,
"library_variantcalling" -> library,
"use_analyze_covariates" -> covariates,
......
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