From c774f02cb7ab75c08cd987f05b5e258d932c0ac9 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 21 Mar 2016 15:48:29 +0100
Subject: [PATCH] Added gwastest to executable
---
public/biopet-public-package/pom.xml | 6 ++----
.../scala/nl/lumc/sasc/biopet/BiopetExecutablePublic.scala | 3 ++-
2 files changed, 4 insertions(+), 5 deletions(-)
diff --git a/public/biopet-public-package/pom.xml b/public/biopet-public-package/pom.xml
index 23f18d9b4..2272ea901 100644
--- a/public/biopet-public-package/pom.xml
+++ b/public/biopet-public-package/pom.xml
@@ -74,16 +74,14 @@
<artifactId>Sage</artifactId>
<version>${project.version}</version>
</dependency>
- <!--
<dependency>
<groupId>nl.lumc.sasc</groupId>
- <artifactId>Yamsvp</artifactId>
+ <artifactId>Kopisu</artifactId>
<version>${project.version}</version>
</dependency>
- -->
<dependency>
<groupId>nl.lumc.sasc</groupId>
- <artifactId>Kopisu</artifactId>
+ <artifactId>GwasTest</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
diff --git a/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutablePublic.scala b/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutablePublic.scala
index a6553001f..8b21fd806 100644
--- a/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutablePublic.scala
+++ b/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutablePublic.scala
@@ -32,7 +32,8 @@ object BiopetExecutablePublic extends BiopetExecutable {
nl.lumc.sasc.biopet.pipelines.toucan.Toucan,
nl.lumc.sasc.biopet.pipelines.shiva.ShivaSvCalling,
nl.lumc.sasc.biopet.pipelines.gears.GearsSingle,
- nl.lumc.sasc.biopet.pipelines.gears.Gears
+ nl.lumc.sasc.biopet.pipelines.gears.Gears,
+ nl.lumc.sasc.biopet.pipelines.gwastest.GwasTest
)
def pipelines: List[MainCommand] = List(
--
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