diff --git a/public/biopet-public-package/pom.xml b/public/biopet-public-package/pom.xml index 23f18d9b40a5d323fc8c4a387359d383436007ae..2272ea90129dd466c9eeaf09dad4a244b2a97965 100644 --- a/public/biopet-public-package/pom.xml +++ b/public/biopet-public-package/pom.xml @@ -74,16 +74,14 @@ <artifactId>Sage</artifactId> <version>${project.version}</version> </dependency> - <!-- <dependency> <groupId>nl.lumc.sasc</groupId> - <artifactId>Yamsvp</artifactId> + <artifactId>Kopisu</artifactId> <version>${project.version}</version> </dependency> - --> <dependency> <groupId>nl.lumc.sasc</groupId> - <artifactId>Kopisu</artifactId> + <artifactId>GwasTest</artifactId> <version>${project.version}</version> </dependency> <dependency> diff --git a/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutablePublic.scala b/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutablePublic.scala index a6553001fb63493fda08ab069cba37e1e8a2ebe5..8b21fd806b6ed32cf81d02f7adce43bad41e2562 100644 --- a/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutablePublic.scala +++ b/public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/BiopetExecutablePublic.scala @@ -32,7 +32,8 @@ object BiopetExecutablePublic extends BiopetExecutable { nl.lumc.sasc.biopet.pipelines.toucan.Toucan, nl.lumc.sasc.biopet.pipelines.shiva.ShivaSvCalling, nl.lumc.sasc.biopet.pipelines.gears.GearsSingle, - nl.lumc.sasc.biopet.pipelines.gears.Gears + nl.lumc.sasc.biopet.pipelines.gears.Gears, + nl.lumc.sasc.biopet.pipelines.gwastest.GwasTest ) def pipelines: List[MainCommand] = List(