From c6b4115d88a26f36d9adbbacfd8b022010f4b901 Mon Sep 17 00:00:00 2001
From: bow <bow@bow.web.id>
Date: Mon, 28 Jul 2014 15:52:18 +0200
Subject: [PATCH] Update flexiprep summary file name
---
.../nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala b/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
index 0bb1fd9ee..d79fc6ca9 100644
--- a/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
+++ b/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
@@ -255,7 +255,7 @@ class Flexiprep(val root: Configurable) extends QScript with BiopetQScript {
summarize.samplename = R1_name
summarize.clip = !skipClip
summarize.trim = !skipTrim
- summarize.out = new File(outputDir + R1_name + ".summary.json")
+ summarize.out = new File(outputDir + summarize.samplename + "." + this.getClass.getSimpleName + ".summary.json")
for ((k, v) <- outputFiles) summarize.deps +:= v
add(summarize)
}
--
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