From c548969b8cf412d6cfe25440707b1e4dcbd58044 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <pjvan_thof@SASC-Peter.(none)>
Date: Wed, 14 May 2014 14:42:32 +0200
Subject: [PATCH] Added gatk package
---
.gitmodules | 6 ++++++
biopet-framework | 2 +-
flexiprep | 2 +-
gatk | 2 +-
gatk-package | 1 +
pom.xml | 2 ++
6 files changed, 12 insertions(+), 3 deletions(-)
create mode 160000 gatk-package
diff --git a/.gitmodules b/.gitmodules
index 21f9d935c..f2a64feb9 100644
--- a/.gitmodules
+++ b/.gitmodules
@@ -7,3 +7,9 @@
[submodule "biopet-framework"]
path = biopet-framework
url = git@git.lumc.nl:biopet/biopet-framework.git
+[submodule "flexiprep-package"]
+ path = flexiprep-package
+ url = git@git.lumc.nl:biopet/flexiprep-package.git
+[submodule "gatk-package"]
+ path = gatk-package
+ url = git@git.lumc.nl:biopet/gatk-package.git
diff --git a/biopet-framework b/biopet-framework
index b7560dc94..2a40f838a 160000
--- a/biopet-framework
+++ b/biopet-framework
@@ -1 +1 @@
-Subproject commit b7560dc94d7f67fbaf802bdeade78eba8d6edbb7
+Subproject commit 2a40f838ae7dcabf8463aa9b93dcd823d8a54c1c
diff --git a/flexiprep b/flexiprep
index eab48304c..5f0f0f3cb 160000
--- a/flexiprep
+++ b/flexiprep
@@ -1 +1 @@
-Subproject commit eab48304cd9041f3b6752eb66123746df135ed3d
+Subproject commit 5f0f0f3cbc8ac06a4d74bef3fbb33a3b6c6c86e6
diff --git a/gatk b/gatk
index 1f3e9e3ca..ab1f523cc 160000
--- a/gatk
+++ b/gatk
@@ -1 +1 @@
-Subproject commit 1f3e9e3ca65ca6500c49facbaa73877095cbe956
+Subproject commit ab1f523cc4f7e0f7a251d6964fb1b113a71c18c7
diff --git a/gatk-package b/gatk-package
new file mode 160000
index 000000000..3905a4a07
--- /dev/null
+++ b/gatk-package
@@ -0,0 +1 @@
+Subproject commit 3905a4a07b1098b9e51dd3af57c62ccaed35432e
diff --git a/pom.xml b/pom.xml
index 950d0fe86..99ac13fb0 100644
--- a/pom.xml
+++ b/pom.xml
@@ -10,5 +10,7 @@
<module>biopet-framework</module>
<module>flexiprep</module>
<module>gatk</module>
+ <module>flexiprep-package</module>
+ <module>gatk-package</module>
</modules>
</project>
\ No newline at end of file
--
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