Bump version to 0.5.0

biopet-aggregate/pom.xml

@@ -5,7 +5,7 @@
     <parent>
         <artifactId>BiopetRoot</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-SNAPSHOT</version>
+        <version>0.5.0</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 
@@ -33,7 +33,7 @@
         <dependency>
             <groupId>nl.lumc.sasc</groupId>
             <artifactId>BiopetProtectedPackage</artifactId>
-            <version>0.5.0-SNAPSHOT</version>
+            <version>0.5.0</version>
         </dependency>
         <dependency>
             <groupId>com.google.guava</groupId>

external-example/pom.xml

@@ -11,7 +11,7 @@
     <artifactId>ExternalExample</artifactId>
 
     <!--TODO: replace version, for a new pipeline it's advised to start with '0.1.0-SNAPSHOT' -->
-    <version>0.5.0-RC2</version>
+    <version>0.5.0</version>
 
     <properties>
         <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
@@ -40,19 +40,19 @@
             <artifactId>BiopetCore</artifactId>
 
             <!--TODO: replace version of pipeline to a fixed version -->
-            <version>0.5.0-RC2</version>
+            <version>0.5.0</version>
         </dependency>
         <dependency>
             <groupId>nl.lumc.sasc</groupId>
             <artifactId>BiopetExtensions</artifactId>
-            <version>0.5.0-RC2</version>
+            <version>0.5.0</version>
         </dependency>
         <dependency>
             <groupId>nl.lumc.sasc</groupId>
             <artifactId>Shiva</artifactId>
 
             <!--TODO: replace version of pipeline to a fixed version -->
-            <version>0.5.0-RC2</version>
+            <version>0.5.0</version>
         </dependency>
     </dependencies>
 

pom.xml

@@ -9,7 +9,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>public</relativePath>
     </parent>
     

protected/biopet-gatk-extensions/pom.xml

@@ -15,7 +15,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>BiopetGatk</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     

protected/biopet-gatk-pipelines/pom.xml

@@ -15,7 +15,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>BiopetGatk</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     

protected/biopet-protected-package/pom.xml

@@ -15,7 +15,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>BiopetGatk</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     

protected/pom.xml

@@ -11,7 +11,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>BiopetRoot</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     <artifactId>BiopetGatk</artifactId>

public/bam2wig/pom.xml

@@ -27,7 +27,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
 

public/bammetrics/pom.xml

@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     

public/basty/pom.xml

@@ -32,7 +32,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     

public/biopet-core/pom.xml

@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     <modelVersion>4.0.0</modelVersion>

public/biopet-extensions/pom.xml

@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 

public/biopet-public-package/pom.xml

@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     

public/biopet-tools-extensions/pom.xml

@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 

public/biopet-tools-package/pom.xml

@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 

public/biopet-tools/pom.xml

@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     <modelVersion>4.0.0</modelVersion>

public/biopet-utils/pom.xml

@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     <modelVersion>4.0.0</modelVersion>

public/carp/pom.xml

@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     

public/flexiprep/pom.xml

@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     

public/gears/pom.xml

@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     <modelVersion>4.0.0</modelVersion>

public/gentrap/pom.xml

@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     

public/kopisu/pom.xml

@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     

public/mapping/pom.xml

@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     

public/pom.xml

@@ -22,7 +22,7 @@
     <groupId>nl.lumc.sasc</groupId>
     <name>Biopet</name>
     <packaging>pom</packaging>
-    <version>0.5.0-RC2</version>
+    <version>0.5.0</version>
     
     <modules>
         <!--<module>biopet-framework</module>-->

public/sage/pom.xml

@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     

public/shiva/pom.xml

@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 

public/toucan/pom.xml

@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     

public/yamsvp/pom.xml

@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>