From c5303e8cd5e896bff4d415f6caf63e6571aed506 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 24 Nov 2015 13:53:09 +0100
Subject: [PATCH] Bump version to 0.5.0

---
 biopet-aggregate/pom.xml                   | 4 ++--
 external-example/pom.xml                   | 8 ++++----
 pom.xml                                    | 2 +-
 protected/biopet-gatk-extensions/pom.xml   | 2 +-
 protected/biopet-gatk-pipelines/pom.xml    | 2 +-
 protected/biopet-protected-package/pom.xml | 2 +-
 protected/pom.xml                          | 2 +-
 public/bam2wig/pom.xml                     | 2 +-
 public/bammetrics/pom.xml                  | 2 +-
 public/basty/pom.xml                       | 2 +-
 public/biopet-core/pom.xml                 | 2 +-
 public/biopet-extensions/pom.xml           | 2 +-
 public/biopet-public-package/pom.xml       | 2 +-
 public/biopet-tools-extensions/pom.xml     | 2 +-
 public/biopet-tools-package/pom.xml        | 2 +-
 public/biopet-tools/pom.xml                | 2 +-
 public/biopet-utils/pom.xml                | 2 +-
 public/carp/pom.xml                        | 2 +-
 public/flexiprep/pom.xml                   | 2 +-
 public/gears/pom.xml                       | 2 +-
 public/gentrap/pom.xml                     | 2 +-
 public/kopisu/pom.xml                      | 2 +-
 public/mapping/pom.xml                     | 2 +-
 public/pom.xml                             | 2 +-
 public/sage/pom.xml                        | 2 +-
 public/shiva/pom.xml                       | 2 +-
 public/toucan/pom.xml                      | 2 +-
 public/yamsvp/pom.xml                      | 2 +-
 28 files changed, 32 insertions(+), 32 deletions(-)

diff --git a/biopet-aggregate/pom.xml b/biopet-aggregate/pom.xml
index 4b8965197..99ccf2260 100644
--- a/biopet-aggregate/pom.xml
+++ b/biopet-aggregate/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <artifactId>BiopetRoot</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-SNAPSHOT</version>
+        <version>0.5.0</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 
@@ -33,7 +33,7 @@
         <dependency>
             <groupId>nl.lumc.sasc</groupId>
             <artifactId>BiopetProtectedPackage</artifactId>
-            <version>0.5.0-SNAPSHOT</version>
+            <version>0.5.0</version>
         </dependency>
         <dependency>
             <groupId>com.google.guava</groupId>
diff --git a/external-example/pom.xml b/external-example/pom.xml
index 47e269311..91031dc83 100644
--- a/external-example/pom.xml
+++ b/external-example/pom.xml
@@ -11,7 +11,7 @@
     <artifactId>ExternalExample</artifactId>
 
     <!--TODO: replace version, for a new pipeline it's advised to start with '0.1.0-SNAPSHOT' -->
-    <version>0.5.0-RC2</version>
+    <version>0.5.0</version>
 
     <properties>
         <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
@@ -40,19 +40,19 @@
             <artifactId>BiopetCore</artifactId>
 
             <!--TODO: replace version of pipeline to a fixed version -->
-            <version>0.5.0-RC2</version>
+            <version>0.5.0</version>
         </dependency>
         <dependency>
             <groupId>nl.lumc.sasc</groupId>
             <artifactId>BiopetExtensions</artifactId>
-            <version>0.5.0-RC2</version>
+            <version>0.5.0</version>
         </dependency>
         <dependency>
             <groupId>nl.lumc.sasc</groupId>
             <artifactId>Shiva</artifactId>
 
             <!--TODO: replace version of pipeline to a fixed version -->
-            <version>0.5.0-RC2</version>
+            <version>0.5.0</version>
         </dependency>
     </dependencies>
 
diff --git a/pom.xml b/pom.xml
index ffed7f03b..c7e5417c1 100644
--- a/pom.xml
+++ b/pom.xml
@@ -9,7 +9,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>public</relativePath>
     </parent>
     
diff --git a/protected/biopet-gatk-extensions/pom.xml b/protected/biopet-gatk-extensions/pom.xml
index 1ef4e0d18..cd8f32d1a 100644
--- a/protected/biopet-gatk-extensions/pom.xml
+++ b/protected/biopet-gatk-extensions/pom.xml
@@ -15,7 +15,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>BiopetGatk</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
diff --git a/protected/biopet-gatk-pipelines/pom.xml b/protected/biopet-gatk-pipelines/pom.xml
index 85f1c6170..e7f330381 100644
--- a/protected/biopet-gatk-pipelines/pom.xml
+++ b/protected/biopet-gatk-pipelines/pom.xml
@@ -15,7 +15,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>BiopetGatk</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
diff --git a/protected/biopet-protected-package/pom.xml b/protected/biopet-protected-package/pom.xml
index 0da6f891a..bfa9a3030 100644
--- a/protected/biopet-protected-package/pom.xml
+++ b/protected/biopet-protected-package/pom.xml
@@ -15,7 +15,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>BiopetGatk</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
diff --git a/protected/pom.xml b/protected/pom.xml
index d150b228e..7bb17235e 100644
--- a/protected/pom.xml
+++ b/protected/pom.xml
@@ -11,7 +11,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>BiopetRoot</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     <artifactId>BiopetGatk</artifactId>
diff --git a/public/bam2wig/pom.xml b/public/bam2wig/pom.xml
index b953b3cb8..98ba88b65 100644
--- a/public/bam2wig/pom.xml
+++ b/public/bam2wig/pom.xml
@@ -27,7 +27,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
 
diff --git a/public/bammetrics/pom.xml b/public/bammetrics/pom.xml
index d4a53613e..7a33bd960 100644
--- a/public/bammetrics/pom.xml
+++ b/public/bammetrics/pom.xml
@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
diff --git a/public/basty/pom.xml b/public/basty/pom.xml
index 8b245437d..b5b764024 100644
--- a/public/basty/pom.xml
+++ b/public/basty/pom.xml
@@ -32,7 +32,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
diff --git a/public/biopet-core/pom.xml b/public/biopet-core/pom.xml
index b4abe4216..9e48d9b06 100644
--- a/public/biopet-core/pom.xml
+++ b/public/biopet-core/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     <modelVersion>4.0.0</modelVersion>
diff --git a/public/biopet-extensions/pom.xml b/public/biopet-extensions/pom.xml
index e61ed2ec6..060c22472 100644
--- a/public/biopet-extensions/pom.xml
+++ b/public/biopet-extensions/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 
diff --git a/public/biopet-public-package/pom.xml b/public/biopet-public-package/pom.xml
index 7262fdb0f..6267b2487 100644
--- a/public/biopet-public-package/pom.xml
+++ b/public/biopet-public-package/pom.xml
@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
diff --git a/public/biopet-tools-extensions/pom.xml b/public/biopet-tools-extensions/pom.xml
index 5e6f3275c..0a98d1ec8 100644
--- a/public/biopet-tools-extensions/pom.xml
+++ b/public/biopet-tools-extensions/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 
diff --git a/public/biopet-tools-package/pom.xml b/public/biopet-tools-package/pom.xml
index f2047c395..078e3ca6f 100644
--- a/public/biopet-tools-package/pom.xml
+++ b/public/biopet-tools-package/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 
diff --git a/public/biopet-tools/pom.xml b/public/biopet-tools/pom.xml
index eb9f307bc..b0a9f29a6 100644
--- a/public/biopet-tools/pom.xml
+++ b/public/biopet-tools/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     <modelVersion>4.0.0</modelVersion>
diff --git a/public/biopet-utils/pom.xml b/public/biopet-utils/pom.xml
index f630c78b7..15648f407 100644
--- a/public/biopet-utils/pom.xml
+++ b/public/biopet-utils/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     <modelVersion>4.0.0</modelVersion>
diff --git a/public/carp/pom.xml b/public/carp/pom.xml
index bc8ab4b96..19dc52563 100644
--- a/public/carp/pom.xml
+++ b/public/carp/pom.xml
@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
diff --git a/public/flexiprep/pom.xml b/public/flexiprep/pom.xml
index 34e6ceac6..1671ea78b 100644
--- a/public/flexiprep/pom.xml
+++ b/public/flexiprep/pom.xml
@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
diff --git a/public/gears/pom.xml b/public/gears/pom.xml
index 80be5a672..d23eef0dd 100644
--- a/public/gears/pom.xml
+++ b/public/gears/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     <modelVersion>4.0.0</modelVersion>
diff --git a/public/gentrap/pom.xml b/public/gentrap/pom.xml
index 9feb28dc4..a3c16521a 100644
--- a/public/gentrap/pom.xml
+++ b/public/gentrap/pom.xml
@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
diff --git a/public/kopisu/pom.xml b/public/kopisu/pom.xml
index e37c2a0f2..9bb48d0f9 100644
--- a/public/kopisu/pom.xml
+++ b/public/kopisu/pom.xml
@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
diff --git a/public/mapping/pom.xml b/public/mapping/pom.xml
index 5c4fc0691..e8c09611d 100644
--- a/public/mapping/pom.xml
+++ b/public/mapping/pom.xml
@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
diff --git a/public/pom.xml b/public/pom.xml
index 73f721444..c7f75a595 100644
--- a/public/pom.xml
+++ b/public/pom.xml
@@ -22,7 +22,7 @@
     <groupId>nl.lumc.sasc</groupId>
     <name>Biopet</name>
     <packaging>pom</packaging>
-    <version>0.5.0-RC2</version>
+    <version>0.5.0</version>
     
     <modules>
         <!--<module>biopet-framework</module>-->
diff --git a/public/sage/pom.xml b/public/sage/pom.xml
index c55ec6ba4..8c23ce7aa 100644
--- a/public/sage/pom.xml
+++ b/public/sage/pom.xml
@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
diff --git a/public/shiva/pom.xml b/public/shiva/pom.xml
index 2d72aaf9c..bd205e789 100644
--- a/public/shiva/pom.xml
+++ b/public/shiva/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <artifactId>Biopet</artifactId>
         <groupId>nl.lumc.sasc</groupId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 
diff --git a/public/toucan/pom.xml b/public/toucan/pom.xml
index 80d419ade..4557395ae 100644
--- a/public/toucan/pom.xml
+++ b/public/toucan/pom.xml
@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
diff --git a/public/yamsvp/pom.xml b/public/yamsvp/pom.xml
index 8b85d2c62..9d2934f3a 100644
--- a/public/yamsvp/pom.xml
+++ b/public/yamsvp/pom.xml
@@ -25,7 +25,7 @@
     <parent>
         <groupId>nl.lumc.sasc</groupId>
         <artifactId>Biopet</artifactId>
-        <version>0.5.0-RC2</version>
+        <version>0.5.0</version>
         <relativePath>../</relativePath>
     </parent>
     
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