Commit c4008d0c authored by Pappas's avatar Pappas
Browse files

Fixing config value

parent d8f47fa1
......@@ -58,7 +58,7 @@ All other values should be provided in the config. Specific config values toward
| readgroup_sequencing_center | String (optional) | Read group sequencing center |
| readgroup_description | String (optional) | Read group description |
| predicted_insertsize | Integer (optional) | Read group predicted insert size |
| keep_final_bam_file | Boolean (default true) | when needed the pipeline can remove the bam file after it's not required anymore for other jobs |
| keep_mapping_bam_file | Boolean (default true) | when needed the pipeline can remove the bam file after it's not required anymore for other jobs |
It is possible to provide any config value as a command line argument as well, using the `-cv` flag.
E.g. `-cv reference=<path/to/reference>` would set value `reference`.
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment