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biopet.biopet
Commits
c4008d0c
Commit
c4008d0c
authored
Jul 06, 2017
by
Pappas
Browse files
Fixing config value
parent
d8f47fa1
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docs/pipelines/mapping.md
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c4008d0c
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@@ -58,7 +58,7 @@ All other values should be provided in the config. Specific config values toward
| readgroup_sequencing_center | String (optional) | Read group sequencing center |
| readgroup_description | String (optional) | Read group description |
| predicted_insertsize | Integer (optional) | Read group predicted insert size |
| keep_
final
_bam_file | Boolean (default true) | when needed the pipeline can remove the bam file after it's not required anymore for other jobs |
| keep_
mapping
_bam_file | Boolean (default true) | when needed the pipeline can remove the bam file after it's not required anymore for other jobs |
It is possible to provide any config value as a command line argument as well, using the
`-cv`
flag.
E.g.
`-cv reference=<path/to/reference>`
would set value
`reference`
.
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