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biopet.biopet
Commits
c3a431d0
Commit
c3a431d0
authored
Jul 11, 2017
by
Peter van 't Hof
Browse files
Fix compile issue
parent
2057a4f2
Changes
1
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcalling.scala
View file @
c3a431d0
...
...
@@ -244,7 +244,7 @@ class ShivaVariantcalling(val parent: Configurable)
"regions_of_interest"
->
roiBedFiles
.
map
(
_
.
getName
),
"amplicon_bed"
->
ampliconBedFile
.
map
(
_
.
getAbsolutePath
),
"somatic_variant_calling"
->
isSomaticVariantCallingConfigured
,
"germline_variant_calling"
->
isGermlineVariantCallingConfigured
)
"germline_variant_calling"
->
isGermlineVariantCallingConfigured
)
/** Files for the summary */
...
...
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