diff --git a/kopisu/pom.xml b/kopisu/pom.xml
index 3e726fe1a70be81fa99fb6172aefbeb0c7ed6aa6..71798e95356650a13233f36614148db7c0b990e2 100644
--- a/kopisu/pom.xml
+++ b/kopisu/pom.xml
@@ -42,6 +42,11 @@
             <artifactId>BiopetExtensions</artifactId>
             <version>${project.version}</version>
         </dependency>
+        <dependency>
+            <groupId>nl.lumc.sasc</groupId>
+            <artifactId>BiopetToolsExtensions</artifactId>
+            <version>${project.version}</version>
+        </dependency>
         <dependency>
             <groupId>org.testng</groupId>
             <artifactId>testng</artifactId>
diff --git a/kopisu/src/main/scala/nl/lumc/sasc/biopet/pipelines/kopisu/methods/XhmmMethod.scala b/kopisu/src/main/scala/nl/lumc/sasc/biopet/pipelines/kopisu/methods/XhmmMethod.scala
index f461a8cf1b5c6f7b905f666003fce722376b852d..8ec0f3bfc51a9cdb6c4b5d9901ff8bb74422e05e 100644
--- a/kopisu/src/main/scala/nl/lumc/sasc/biopet/pipelines/kopisu/methods/XhmmMethod.scala
+++ b/kopisu/src/main/scala/nl/lumc/sasc/biopet/pipelines/kopisu/methods/XhmmMethod.scala
@@ -2,6 +2,7 @@ package nl.lumc.sasc.biopet.pipelines.kopisu.methods
 
 import nl.lumc.sasc.biopet.core.Reference
 import nl.lumc.sasc.biopet.extensions.gatk.DepthOfCoverage
+import nl.lumc.sasc.biopet.extensions.tools.XcnvToBed
 import nl.lumc.sasc.biopet.extensions.xhmm._
 import nl.lumc.sasc.biopet.utils.config.Configurable
 
@@ -98,6 +99,17 @@ class XhmmMethod(val root: Configurable) extends CnvMethod with Reference {
     genotype.outputVcf = new File(xhmmDir, "xhmm.vcf")
     add(genotype)
 
+    // create bed files
+    val bedDir = new File(xhmmDir, "beds")
+    val beds = inputBams.keys.map{ x =>
+      val z = new XcnvToBed(this)
+      z.inputXcnv = discover.outputXcnv
+      z.sample = x
+      z.outpuBed = new File(bedDir, s"$x.bed")
+      z
+    }
+    addAll(beds)
+
     addSummaryJobs()
 
   }