Commit c16a5040 authored by bow's avatar bow
Browse files

Update WipeReads test cases

parent 457d3655
......@@ -11,7 +11,7 @@ r04 99 chrQ 450 60 10M = 490 50 CGTACGTACG EEFFGGHHII RG:Z:001
r04 147 chrQ 490 60 10M = 450 -50 GCATGCATGC EEFFGGHHII RG:Z:001
r03 163 chrQ 650 60 10M = 690 50 TTTTTCCCCC HHHHHHHHHH RG:Z:001
r03 83 chrQ 690 60 10M = 650 -50 CCCCCTTTTT HHHHHHHHHH RG:Z:001
r05 99 chrQ 850 60 5M100N5M = 1290 50 TACGTACGTA EEFFGGHHII RG:Z:001
r05 147 chrQ 1290 60 5M100N5M = 1250 -50 ATGCATGCAT EEFFGGHHII RG:Z:001
r05 99 chrQ 890 60 5M200N5M = 1140 50 TACGTACGTA EEFFGGHHII RG:Z:001
r05 147 chrQ 1140 60 10M = 890 -50 ATGCATGCAT EEFFGGHHII RG:Z:001
r06 4 * 0 0 * * 0 0 ATATATATAT HIHIHIHIHI RG:Z:001
r06 4 * 0 0 * * 0 0 GCGCGCGCGC HIHIHIHIHI RG:Z:001
......@@ -171,8 +171,8 @@ class WipeReadsUnitTest extends Assertions {
assert(isFilteredOut("r04\t99\tchrQ\t450\t60\t10M\t=\t490\t50\tCGTACGTACG\tEEFFGGHHII\tRG:Z:001\n"))
assert(isFilteredOut("r04\t147\tchrQ\t490\t60\t10M\t=\t450\t-50\tGCATGCATGC\tEEFFGGHHII\tRG:Z:001\n"))
/* TODO: exclude r05 from set
assert(!isFilteredOut("r05\t99\tchrQ\t850\t60\t5M100N5M\t=\t1290\t50\tTACGTACGTA\tEEFFGGHHII\tRG:Z:001\n"))
assert(!isFilteredOut("r05\t147\tchrQ\t1290\t60\t5M100N5M\t=\t1250\t-50\tATGCATGCAT\tEEFFGGHHII\tRG:Z:001\n"))
assert(!isFilteredOut("r05\t99\tchrQ\t850\t60\t5M100N5M\t=\t1140\t50\tTACGTACGTA\tEEFFGGHHII\tRG:Z:001\n"))
assert(!isFilteredOut("r05\t147\tchrQ\t1140\t60\t10M\t=\t850\t-50\tATGCATGCAT\tEEFFGGHHII\tRG:Z:001\n"))
*/
}
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment