Update WipeReads test cases

biopet-framework/src/test/resources/paired01.sam

@@ -11,7 +11,7 @@ r04	99	chrQ	450	60	10M	=	490	50	CGTACGTACG	EEFFGGHHII	RG:Z:001
 r04	147	chrQ	490	60	10M	=	450	-50	GCATGCATGC	EEFFGGHHII	RG:Z:001
 r03	163	chrQ	650	60	10M	=	690	50	TTTTTCCCCC	HHHHHHHHHH	RG:Z:001
 r03	83	chrQ	690	60	10M	=	650	-50	CCCCCTTTTT	HHHHHHHHHH	RG:Z:001
-r05	99	chrQ	850	60	5M100N5M	=	1290	50	TACGTACGTA	EEFFGGHHII	RG:Z:001
-r05	147	chrQ	1290	60	5M100N5M	=	1250	-50	ATGCATGCAT	EEFFGGHHII	RG:Z:001
+r05	99	chrQ	890	60	5M200N5M	=	1140	50	TACGTACGTA	EEFFGGHHII	RG:Z:001
+r05	147	chrQ	1140	60	10M	=	890	-50	ATGCATGCAT	EEFFGGHHII	RG:Z:001
 r06	4	*	0	0	*	*	0	0	ATATATATAT	HIHIHIHIHI	RG:Z:001
 r06	4	*	0	0	*	*	0	0	GCGCGCGCGC	HIHIHIHIHI	RG:Z:001

biopet-framework/src/test/scala/nl/lumc/sasc/biopet/core/apps/WipeReadsUnitTest.scala

@@ -171,8 +171,8 @@ class WipeReadsUnitTest extends Assertions {
     assert(isFilteredOut("r04\t99\tchrQ\t450\t60\t10M\t=\t490\t50\tCGTACGTACG\tEEFFGGHHII\tRG:Z:001\n"))
     assert(isFilteredOut("r04\t147\tchrQ\t490\t60\t10M\t=\t450\t-50\tGCATGCATGC\tEEFFGGHHII\tRG:Z:001\n"))
     /* TODO: exclude r05 from set
-    assert(!isFilteredOut("r05\t99\tchrQ\t850\t60\t5M100N5M\t=\t1290\t50\tTACGTACGTA\tEEFFGGHHII\tRG:Z:001\n"))
-    assert(!isFilteredOut("r05\t147\tchrQ\t1290\t60\t5M100N5M\t=\t1250\t-50\tATGCATGCAT\tEEFFGGHHII\tRG:Z:001\n"))
+    assert(!isFilteredOut("r05\t99\tchrQ\t850\t60\t5M100N5M\t=\t1140\t50\tTACGTACGTA\tEEFFGGHHII\tRG:Z:001\n"))
+    assert(!isFilteredOut("r05\t147\tchrQ\t1140\t60\t10M\t=\t850\t-50\tATGCATGCAT\tEEFFGGHHII\tRG:Z:001\n"))
      */
   }