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biopet.biopet
Commits
c0064f43
Commit
c0064f43
authored
Mar 08, 2015
by
bow
Browse files
Update Cufflinks defaults for cluster run
parent
3ed93bee
Changes
1
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Cufflinks.scala
View file @
c0064f43
...
...
@@ -29,6 +29,12 @@ class Cufflinks(val root: Configurable) extends BiopetCommandLineFunction {
/** default executable */
executable
=
config
(
"exe"
,
default
=
"cufflinks"
)
/** default threads */
override
def
defaultThreads
=
num_threads
.
getOrElse
(
1
)
/** default vmem for cluster jobs */
override
def
defaultVmem
=
"4G"
/** input file */
@Input
(
doc
=
"Input file (SAM or BAM)"
,
required
=
true
)
var
input
:
File
=
null
...
...
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