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biopet.biopet
Commit beeb89dc authored by Peter van 't Hof's avatar Peter van 't Hof
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Style fixes

parent de3e8ea9
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/Shiva.scala
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......@@ -16,13 +16,13 @@ package nl.lumc.sasc.biopet.pipelines.shiva
import java.io.File
import nl.lumc.sasc.biopet.core.{PipelineCommand, Reference}
import nl.lumc.sasc.biopet.core.{ PipelineCommand, Reference }
import nl.lumc.sasc.biopet.core.report.ReportBuilderExtension
import nl.lumc.sasc.biopet.extensions.gatk._
import nl.lumc.sasc.biopet.extensions.tools.ValidateVcf
import nl.lumc.sasc.biopet.pipelines.bammetrics.TargetRegions
import nl.lumc.sasc.biopet.pipelines.kopisu.Kopisu
import nl.lumc.sasc.biopet.pipelines.mapping.{Mapping, MultisampleMappingTrait}
import nl.lumc.sasc.biopet.pipelines.mapping.{ Mapping, MultisampleMappingTrait }
import nl.lumc.sasc.biopet.pipelines.toucan.Toucan
import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.queue.QScript
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