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biopet.biopet
Commits
be748324
Commit
be748324
authored
Mar 09, 2017
by
Peter van 't Hof
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Format fix
parent
0d8bafce
Changes
2
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2 changed files
with
3 additions
and
3 deletions
+3
-3
biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala
...scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala
+1
-1
biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/ConfigUtils.scala
...rc/main/scala/nl/lumc/sasc/biopet/utils/ConfigUtils.scala
+2
-2
No files found.
biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala
View file @
be748324
...
...
@@ -168,7 +168,7 @@ class WriteSummary(val parent: SummaryQScript) extends InProcessFunction with Co
val
pipeFunctions
=
(
for
(
f
<-
qscript
.
functions
)
yield
f
match
{
case
f
:
BiopetCommandLineFunction
=>
f
.
pipesJobs
case
_
=>
Nil
case
_
=>
Nil
}).
flatten
(
for
(
f
<-
qscript
.
functions
++
pipeFunctions
)
yield
{
f
match
{
...
...
biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/ConfigUtils.scala
View file @
be748324
...
...
@@ -106,9 +106,9 @@ object ConfigUtils extends Logging {
val
value
=
map
.
get
(
path
.
head
)
if
(
path
.
tail
.
isEmpty
||
value
.
isEmpty
)
value
else
value
.
get
match
{
case
map
:
Map
[
_
,
_
]
=>
getValueFromPath
(
map
.
asInstanceOf
[
Map
[
String
,
Any
]],
path
.
tail
)
case
map
:
Map
[
_
,
_
]
=>
getValueFromPath
(
map
.
asInstanceOf
[
Map
[
String
,
Any
]],
path
.
tail
)
case
map
:
java.util.LinkedHashMap
[
_
,
_
]
=>
getValueFromPath
(
map
.
toMap
.
asInstanceOf
[
Map
[
String
,
Any
]],
path
.
tail
)
case
_
=>
None
case
_
=>
None
}
}
else
Some
(
map
)
}
...
...
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