diff --git a/public/biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/ReferenceTest.scala b/public/biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/ReferenceTest.scala index 31b70db9d1595f2dd5614c9abe4a5fa1047ed834..79741a2c2eb73a39cce67d8ad48b5680ba939163 100644 --- a/public/biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/ReferenceTest.scala +++ b/public/biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/ReferenceTest.scala @@ -19,6 +19,7 @@ class ReferenceTest extends TestNGSuite with Matchers with MockitoSugar { @Test def testDefault: Unit = { + Logging.errors.clear() make(config :: testReferenceNoIndex :: Nil).referenceFasta() Logging.checkErrors(true) diff --git a/public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/Logging.scala b/public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/Logging.scala index d01755e07300cf09f874bc36f07d640d6567c84e..9d4b9dc2bf84bcda084ce5de9647620e1a130658 100644 --- a/public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/Logging.scala +++ b/public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/Logging.scala @@ -36,7 +36,7 @@ trait Logging { object Logging { val logger = Logger.getRootLogger - private val errors: ListBuffer[Exception] = ListBuffer() + private[biopet] val errors: ListBuffer[Exception] = ListBuffer() def addError(error: String, debug: String = null): Unit = { val msg = error + (if (debug != null && logger.isDebugEnabled) "; " + debug else "")