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biopet.biopet
Commits
be27ea6a
Commit
be27ea6a
authored
Mar 09, 2017
by
Peter van 't Hof
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let's test fail on format/git issues
parent
dbbe4fba
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2
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flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
...a/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
+1
-1
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be27ea6a
...
...
@@ -21,6 +21,10 @@ node('local') {
junit
'*/target/surefire-reports/*.xml'
}
stage
(
'Check git on changes'
)
{
sh
'if [ $(git diff | wc -l) -eq 0 ]; then true; else echo "[ERROR] Git is not clean anymore after build"; false; fi'
}
stage
(
'Check Documentation'
)
{
sh
'mkdocs build --clean --strict'
}
...
...
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
View file @
be27ea6a
...
...
@@ -30,7 +30,7 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
var
inputR1
:
File
=
_
@Input
(
doc
=
"R2 fastq file (gzipped allowed)"
,
shortName
=
"R2"
,
fullName
=
"inputR2"
,
required
=
false
)
var
inputR2
:
Option
[
File
]
=
None
var
inputR2
:
Option
[
File
]
=
None
/** Skip Trim fastq files */
var
skipTrim
:
Boolean
=
config
(
"skip_trim"
,
default
=
false
)
...
...
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