From bdd80767815c50e04688b5aaf16249ae77ca9d08 Mon Sep 17 00:00:00 2001
From: Sander Bollen <a.h.b.bollen@lumc.nl>
Date: Thu, 27 Aug 2015 14:36:02 +0200
Subject: [PATCH] FastqSplitterTest
---
.../sasc/biopet/tools/FastqSplitterTest.scala | 41 +++++++++++++++++++
1 file changed, 41 insertions(+)
create mode 100644 public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/FastqSplitterTest.scala
diff --git a/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/FastqSplitterTest.scala b/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/FastqSplitterTest.scala
new file mode 100644
index 000000000..8f78acba7
--- /dev/null
+++ b/public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/FastqSplitterTest.scala
@@ -0,0 +1,41 @@
+package nl.lumc.sasc.biopet.tools
+
+import java.io.File
+import java.nio.file.Paths
+
+import org.scalatest.Matchers
+import org.scalatest.mock.MockitoSugar
+import org.scalatest.testng.TestNGSuite
+import org.testng.annotations.Test
+
+/**
+ * Created by ahbbollen on 27-8-15.
+ */
+class FastqSplitterTest extends TestNGSuite with MockitoSugar with Matchers {
+
+ import FastqSplitter._
+ private def resourcePath(p: String): String = {
+ Paths.get(getClass.getResource(p).toURI).toString
+ }
+
+ val fq = resourcePath("/paired01a.fq")
+
+ @Test
+ def testMain() = {
+ val temp = File.createTempFile("out", ".fastq")
+
+ val args = Array("-I", fq, "-o", temp.getAbsolutePath)
+ main(args)
+ }
+
+ @Test
+ def testManyOutMain() = {
+ val files = (0 until 10).map(_ => File.createTempFile("out", ".fastq"))
+ var args = Array("-I", fq)
+ files.foreach(x => args ++= Array("-o", x.getAbsolutePath))
+ main(args)
+ }
+
+
+
+}
--
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