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Commit bd27470f authored by Peter van 't Hof's avatar Peter van 't Hof
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Remove unused xml code

parent 5d9efd89
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public/biopet-framework/pom.xml
View file @ bd27470f
......@@ -49,11 +49,6 @@
<artifactId>scala-library</artifactId>
<version>2.11.2</version>
</dependency>
<!-- <dependency>
<groupId>org.broadinstitute.gatk</groupId>
<artifactId>gatk-queue-package-distribution</artifactId>
<version>3.3</version>
</dependency>-->
<dependency>
<groupId>org.broadinstitute.gatk</groupId>
<artifactId>gatk-queue</artifactId>
......@@ -152,52 +147,6 @@
</archive>
</configuration>
</plugin>
<!-- <plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>2.3</version>
<configuration>
<finalName>Biopet-${project.version}-${git.commit.id.abbrev}</finalName>
<transformers>
<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
<manifestEntries>
<Main-Class>${app.main.class}</Main-Class>
<X-Compile-Source-JDK>${maven.compile.source}</X-Compile-Source-JDK>
<X-Compile-Target-JDK>${maven.compile.target}</X-Compile-Target-JDK>
</manifestEntries>
</transformer>
</transformers>
<filters>
<filter>
<artifact>org.broadinstitute.gatk:gatk-queue-package-distribution</artifact>
<includes>
<include>*/**</include>
<include>org/simpleframework/**</include>
<include>org/jets3t/**</include>
<include>com/sun/**</include>
<include>org/ggf/**</include>
<include>picard/**</include>
<include>htsjdk/**</include>
<include>javassist/**</include>
<include>com/google/**</include>
<include>org/reflections/</include>
<include>org/jgrapht/**</include>
<include>org/broadinstitute/**</include>
<include>org/apache/**</include>
<include>scala/tools/nsc/reporters/**</include>
</includes>
</filter>
</filters>
</configuration>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
</execution>
</executions>
</plugin>-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
......
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