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biopet.biopet
Commits
bb158f36
Commit
bb158f36
authored
May 21, 2014
by
Peter van 't Hof
Browse files
- Fixed output file
parent
f95148c6
Changes
1
Show whitespace changes
Inline
Side-by-side
biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala
View file @
bb158f36
...
@@ -30,7 +30,7 @@ class Star(private var globalConfig: Config) extends CommandLineFunction {
...
@@ -30,7 +30,7 @@ class Star(private var globalConfig: Config) extends CommandLineFunction {
if
(
threads
>
maxThreads
)
threads
=
maxThreads
if
(
threads
>
maxThreads
)
threads
=
maxThreads
nCoresRequest
=
Option
(
threads
)
nCoresRequest
=
Option
(
threads
)
@Output
var
outputSam
:
File
=
new
File
(
outputDir
+
"/
star_outp
ut.sam"
)
@Output
var
outputSam
:
File
=
new
File
(
outputDir
+
"/
Aligned.o
ut.sam"
)
def
commandLine
:
String
=
{
def
commandLine
:
String
=
{
//init()
//init()
...
...
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