From bb158f365bf70ac10cb68a1824e10bcb6c8a0739 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 21 May 2014 15:28:55 +0200
Subject: [PATCH] - Fixed output file
---
.../src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala b/biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala
index f898b6676..079488837 100644
--- a/biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala
+++ b/biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Star.scala
@@ -30,7 +30,7 @@ class Star(private var globalConfig: Config) extends CommandLineFunction {
if (threads > maxThreads) threads = maxThreads
nCoresRequest = Option(threads)
- @Output var outputSam: File = new File(outputDir + "/star_output.sam")
+ @Output var outputSam: File = new File(outputDir + "/Aligned.out.sam")
def commandLine : String= {
//init()
--
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