diff --git a/public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/sambamba/SambambaView.scala b/public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/sambamba/SambambaView.scala index 4a012d22950898d662c6285ddf47fbec06e6bce1..c2e4e5f973296d0f2ddfffe3ddf742440b6da818 100644 --- a/public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/sambamba/SambambaView.scala +++ b/public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/sambamba/SambambaView.scala @@ -43,6 +43,6 @@ class SambambaView(val root: Configurable) extends Sambamba { optional("--format", format.get) + optional("--regions", regions) + optional("--compression-level", compression_level) + - required("--output" + output) + + required("--output", output) + required(input) }