Commit ba0c1408 authored by Peter van 't Hof's avatar Peter van 't Hof

Make new bam file intemediate

parent 22f48ed8
......@@ -41,6 +41,7 @@ class FragmentsPerGene(val root: Configurable) extends QScript with Measurement
samtoolsSort.input = file
samtoolsSort.output = swapExt(outputDir, file, ".bam", ".idsorted.bam")
samtoolsSort.sortByName = true
samtoolsSort.isIntermediate = true
add(samtoolsSort)
samtoolsSort.output
} else file
......
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