From b9ad17e872199e148b474987e4da71c2be35e864 Mon Sep 17 00:00:00 2001
From: bow <bow@bow.web.id>
Date: Mon, 27 Oct 2014 17:07:04 +0100
Subject: [PATCH] Add logging message when writing
---
.../scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala | 1 +
1 file changed, 1 insertion(+)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
index a740143ea..c232f9ca0 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
@@ -142,6 +142,7 @@ object ExtractAlignedFastq extends ToolCommand {
case (x, y) => new BasicFastqWriter(outputFastq2)
}
+ logger.info("Writing output file(s) ...")
// zip, filter based on function, and write to output file(s)
i1.zip(i2)
.filter((rec) => memFunc(rec._1, rec._2))
--
GitLab