From b975df6e89e061749ace6eaf91d224df0b83b8a5 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 4 Aug 2014 11:56:58 +0200
Subject: [PATCH] Added mkdir on outputDir
---
.../src/main/scala/nl/lumc/sasc/biopet/core/BiopetQScript.scala | 1 +
1 file changed, 1 insertion(+)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetQScript.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetQScript.scala
index 70ad6cca7..ec67c6167 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetQScript.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetQScript.scala
@@ -29,6 +29,7 @@ trait BiopetQScript extends Configurable {
biopetScript
val configReport = globalConfig.getReport
val configReportFile = new File(outputDir + qSettings.runName + ".configreport.txt")
+ configReportFile.getParentFile.mkdir
val writer = new PrintWriter(configReportFile)
writer.write(configReport)
writer.close()
--
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