From b93f26423e07088a2acea28ed69cf3d5ad8df74e Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 12 Jan 2016 15:01:24 +0100
Subject: [PATCH] Fix metrics
---
.../scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala b/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala
index 62d004d63..0eab05598 100644
--- a/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala
+++ b/public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala
@@ -132,8 +132,7 @@ class Gentrap(val root: Configurable) extends QScript
),
// disable markduplicates since it may not play well with all aligners (this can still be overriden via config)
"mapping" -> Map(
- "skip_markduplicates" -> true,
- "skip_metrics" -> true
+ "skip_markduplicates" -> true
)
)
--
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