From b89053254f945dafd03154c3a03014e79b2873bd Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 10 Nov 2014 13:00:04 +0100
Subject: [PATCH] Fix typo and added exception
---
.../nl/lumc/sasc/biopet/core/BiopetExecutable.scala | 13 ++++++++-----
1 file changed, 8 insertions(+), 5 deletions(-)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutable.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutable.scala
index 65f73c356..c8c1751b8 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutable.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutable.scala
@@ -85,16 +85,19 @@ object BiopetExecutable extends Logging {
return command.get
}
- // Read config files
- for (t <- 0 until args.size) {
- if (args(t) == "-config" || args(t) == "--config_ile") Config.global.loadConfigFile(new File(args(t + 1)))
- }
-
args match {
case Array("version") => {
println("version: " + getVersion)
}
case Array(module, name, passArgs @ _*) => {
+ // Reading config files
+ val argsSize = passArgs.size
+ for (t <- 0 until argsSize) {
+ if (passArgs(t) == "-config" || args(t) == "--config_file") {
+ if (t >= argsSize) throw new IllegalStateException("-config needs a value")
+ Config.global.loadConfigFile(new File(passArgs(t + 1)))
+ }
+ }
getCommand(module, name).main(passArgs.toArray)
}
case Array(module) => {
--
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