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biopet.biopet
Commit b84441a6 authored by Sander Bollen's avatar Sander Bollen Committed by Peter van 't Hof
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additional config values

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docs/pipelines/shiva.md
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......@@ -221,6 +221,13 @@ This means this method is not suited for very small target kits.
Please note that it is _not_ possible to run this method without GATK dependencies.
Additional optional config values:
| Namespace | Name | Type | Default | Meaning |
| --------- | ---- | ---- | ------- | ------- |
| xhmm_normalize | normalize_method | String | PVE_mean | The normalization method to use |
| xhmm_normalize | pve_mean_factor | Float | 0.7 | Factor for PVE mean normaliation |
## Example configs
**Config example**
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