Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
b80652eb
Commit
b80652eb
authored
Apr 26, 2016
by
Peter van 't Hof
Browse files
Fixed cycle bug
parent
0986121f
Changes
1
Hide whitespace changes
Inline
Side-by-side
protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/IndelRealigner.scala
View file @
b80652eb
...
...
@@ -184,7 +184,6 @@ object IndelRealigner {
ir
.
input_file
:+=
input
ir
.
targetIntervals
=
targetIntervals
ir
.
out
=
new
File
(
outputDir
,
input
.
getName
.
stripSuffix
(
".bam"
)
+
".realign.bam"
)
ir
.
deps
:+=
new
File
(
outputDir
,
input
.
getName
.
stripSuffix
(
".bam"
)
+
".realign.bai"
)
ir
}
}
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment