Fixed small issue with dependency

biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/WriteDependencies.scala

@@ -141,7 +141,7 @@ object WriteDependencies extends Logging with Configurable {
 
     val jobsDeps = jobs.map(x => x._1 -> (x._2("depends_on_jobs") match {
       case l: List[_] => l.map(_.toString)
-      case _ => throw new IllegalStateException("Value 'depends_on_jobs' is not a list")
+      case _          => throw new IllegalStateException("Value 'depends_on_jobs' is not a list")
     }))
     val jobsWriter = new PrintWriter(new File(outputDir, s"$prefix.jobs.json"))
     jobsWriter.println(ConfigUtils.mapToJson(jobsDeps).spaces2)

biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala

@@ -57,12 +57,12 @@ class WriteSummary(val root: Configurable) extends InProcessFunction with Config
     for (q <- qscript.summaryQScripts)
       deps :+= q.summaryFile
     for ((_, l) <- qscript.summarizables; s <- l) s match {
-      case f: QFunction => try {
+      case f: QFunction if qscript.functions.contains(f) => try {
         deps :+= f.firstOutput
-      }  catch {
+      } catch {
         case e: NullPointerException => logger.warn("Queue values are not init")
       }
-      case _            =>
+      case _ =>
     }
 
     jobOutputFile = new File(out.getParentFile, ".%s.%s.out".format(out.getName, analysisName))