Commit b5d6f8b1 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed arg

parent d9396e61
...@@ -217,7 +217,7 @@ class UnifiedGenotyper(val root: Configurable) extends CommandLineGATK with Scat ...@@ -217,7 +217,7 @@ class UnifiedGenotyper(val root: Configurable) extends CommandLineGATK with Scat
/** If provided, only these samples will be emitted into the VCF, regardless of which samples are present in the BAM file */ /** If provided, only these samples will be emitted into the VCF, regardless of which samples are present in the BAM file */
@Argument(fullName = "onlyEmitSamples", shortName = "onlyEmitSamples", doc = "If provided, only these samples will be emitted into the VCF, regardless of which samples are present in the BAM file", required = false, exclusiveOf = "", validation = "") @Argument(fullName = "onlyEmitSamples", shortName = "onlyEmitSamples", doc = "If provided, only these samples will be emitted into the VCF, regardless of which samples are present in the BAM file", required = false, exclusiveOf = "", validation = "")
var onlyEmitSamples: List[String] = config("onlyEmitSamples", default = false) var onlyEmitSamples: List[String] = config("onlyEmitSamples", default = Nil)
/** File to print all of the annotated and detailed debugging output */ /** File to print all of the annotated and detailed debugging output */
@Argument(fullName = "debug_file", shortName = "debug_file", doc = "File to print all of the annotated and detailed debugging output", required = false, exclusiveOf = "", validation = "") @Argument(fullName = "debug_file", shortName = "debug_file", doc = "File to print all of the annotated and detailed debugging output", required = false, exclusiveOf = "", validation = "")
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