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biopet.biopet
Commits
b576d9da
Commit
b576d9da
authored
Nov 21, 2016
by
Peter van 't Hof
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Add bamstats to summary
parent
93f5537e
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bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
...nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
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bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
View file @
b576d9da
...
...
@@ -86,6 +86,7 @@ class BamMetrics(val root: Configurable) extends QScript
bamStats
.
bamFile
=
inputBam
bamStats
.
outputDir
=
new
File
(
outputDir
,
"bamstats"
)
add
(
bamStats
)
addSummarizable
(
bamStats
,
"bamStats"
)
val
multiMetrics
=
new
CollectMultipleMetrics
(
this
)
multiMetrics
.
input
=
inputBam
...
...
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