From b4688da4bf008d9d7878e523e19bba4194e82a3b Mon Sep 17 00:00:00 2001
From: Ioannis Moustakas <i.moustakas@lumc.nl>
Date: Thu, 14 Jul 2016 14:20:21 +0200
Subject: [PATCH] Improve phrasing

---
 docs/tools/WipeReads.md | 11 +++++------
 1 file changed, 5 insertions(+), 6 deletions(-)

diff --git a/docs/tools/WipeReads.md b/docs/tools/WipeReads.md
index 0263e1b7f..6c26fe2ee 100644
--- a/docs/tools/WipeReads.md
+++ b/docs/tools/WipeReads.md
@@ -1,10 +1,9 @@
 # WipeReads
 
 ## Introduction
-WipeReads is a tool for removing reads from indexed BAM files.
-It respects pairing information and can be set to remove reads whose duplicate
-maps outside of the target region. The main use case is to remove reads mapping
-to known ribosomal RNA regions (using a supplied BED file containing intervals for these regions).
+WipeReads is a tool for removing reads from indexed BAM files that are inside a user defined region.
+It takes pairing information into account and can be set to remove reads if one of the pairs maps outside of the target region. 
+An application example is to remove reads mapping to known ribosomal RNA regions (using a supplied BED file containing intervals for these regions).
 
 ## Example
 To open the help menu:
@@ -62,5 +61,5 @@ biopet tool WipeReads --input_file myBam.bam \
 ~~~
 
 ## Output
-This tool outputs a bam file containing all the reads not inside a ribosomal region.
-And optionally a bam file with only the ribosomal reads
+This tool outputs a bam file containing all the reads not inside the ribosomal region.
+It can optionally output a bam file with only the reads inside the ribosomal region
-- 
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