From b35d86444752051ce881c360c484b9b903a58892 Mon Sep 17 00:00:00 2001
From: bow <bow@bow.web.id>
Date: Sat, 4 Apr 2015 14:08:46 +0200
Subject: [PATCH] Remove unecessary zipping
---
.../nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
index 501c406c7..e72ee4ead 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
@@ -146,9 +146,8 @@ object ExtractAlignedFastq extends ToolCommand {
def extractReads(memFunc: FastqInput => Boolean,
inputFastq1: FastqReader, outputFastq1: BasicFastqWriter): Unit =
inputFastq1.iterator.asScala
- .zip(Iterator.continually(None))
- .filter(rec => memFunc(rec._1, rec._2))
- .foreach(rec => outputFastq1.write(rec._1))
+ .filter(rec => memFunc((rec, None)))
+ .foreach(rec => outputFastq1.write(rec))
/**
* Extracts reads from the given input Fastq pairs and writes to new output Fastq pair files
--
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