From b1dd7d9ae688f35b5f36211e69e27064bbc00fee Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 23 Sep 2015 20:26:59 +0200
Subject: [PATCH] Changed repo link of Gatk

---
 README.md     | 2 +-
 docs/index.md | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index 06afe292f..2c0e06abf 100755
--- a/README.md
+++ b/README.md
@@ -64,7 +64,7 @@ We welcome any kind of contribution, be it merge requests on the code base, docu
 To develop Biopet, Java 7, Maven 3.2.2, and GATK Queue 3.4 is required. Please consult the Java homepage and Maven homepage for the respective installation instruction. After you have both Java and Maven installed, you would then need to install GATK Queue. However, as the GATK Queue package is not yet available as an artifact in Maven Central, you will need to download, compile, and install GATK Queue first.
 
 ~~~
-$ git clone https://github.com/broadgsa/gatk
+$ git clone https://github.com/broadgsa/gatk-protected
 $ cd gatk
 $ git checkout 3.4                              # the current release is based on GATK 3.4
 $ mvn -U clean install
diff --git a/docs/index.md b/docs/index.md
index 39fb7fce5..f14457707 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -64,7 +64,7 @@ We welcome any kind of contribution, be it merge requests on the code base, docu
 To develop Biopet, Java 7, Maven 3.2.2, and GATK Queue 3.4 is required. Please consult the Java homepage and Maven homepage for the respective installation instruction. After you have both Java and Maven installed, you would then need to install GATK Queue. However, as the GATK Queue package is not yet available as an artifact in Maven Central, you will need to download, compile, and install GATK Queue first.
 
 ~~~
-$ git clone https://github.com/broadgsa/gatk
+$ git clone https://github.com/broadgsa/gatk-protected
 $ cd gatk
 $ git checkout 3.4                              # the current release is based on GATK 3.4
 $ mvn -U clean install
-- 
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