Commit b1a344ed authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added vmem option and uses by default 4G

parent 1168c8e2
......@@ -33,6 +33,7 @@ class Fastqc(val globalConfig: Config) extends CommandLineFunction {
var maxThreads: Int = config.getAsInt("maxthreads", 24)
if (threads > maxThreads) threads = maxThreads
nCoresRequest = Option(threads)
this.jobNativeArgs :+= "-l h_vmem="+config.getAsString("vmem", "4G")
def commandLine = {
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