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biopet.biopet
Commits
b17d4472
Commit
b17d4472
authored
Feb 02, 2017
by
Peter van 't Hof
Browse files
Fix write dependencies
parent
6abbb191
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/WriteDependencies.scala
View file @
b17d4472
...
...
@@ -117,7 +117,7 @@ object WriteDependencies extends Logging with Configurable {
case
_
=>
false
}),
"intermediate"
->
f
.
isIntermediate
,
"depends_on_intermediate"
->
BiopetQScript
.
safeOutputs
(
f
).
getOrElse
(
Seq
()).
exists
(
files
(
_
).
isIntermediate
),
"depends_on_jobs"
->
BiopetQScript
.
safe
Out
puts
(
f
).
getOrElse
(
Seq
()).
toList
.
flatMap
(
files
(
_
).
outputJobNames
).
distinct
,
"depends_on_jobs"
->
BiopetQScript
.
safe
In
puts
(
f
).
getOrElse
(
Seq
()).
toList
.
flatMap
(
files
(
_
).
outputJobNames
).
distinct
,
"output_used_by_jobs"
->
BiopetQScript
.
safeOutputs
(
f
).
getOrElse
(
Seq
()).
toList
.
flatMap
(
files
(
_
).
inputJobNames
).
distinct
,
"outputs"
->
(
f
.
jobOutputFile
::
BiopetQScript
.
safeOutputs
(
f
).
getOrElse
(
Seq
()).
toList
),
"inputs"
->
BiopetQScript
.
safeOutputs
(
f
).
getOrElse
(
Seq
()).
toList
,
...
...
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