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Commit b0e7d37d authored by Peter van 't Hof's avatar Peter van 't Hof
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Fix format

parent 2a3db002
Hide whitespace changes
Inline Side-by-side
biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
View file @ b0e7d37d
...@@ -63,7 +63,7 @@ object ExtractAlignedFastq extends ToolCommand { ...@@ -63,7 +63,7 @@ object ExtractAlignedFastq extends ToolCommand {
def intFromCoord(s: String): Int = s.replaceAll(",", "").replaceAll("\\.", "").toInt def intFromCoord(s: String): Int = s.replaceAll(",", "").replaceAll("\\.", "").toInt
inStrings.map { inStrings.map {
case ptn1(chr, start, end) if intFromCoord(end) >= intFromCoord(start) => new Interval(chr, intFromCoord(start), intFromCoord(end)) case ptn1(chr, start, end) if intFromCoord(end) >= intFromCoord(start) => new Interval(chr, intFromCoord(start), intFromCoord(end))
case ptn2(chr, start) => case ptn2(chr, start) =>
val startCoord = intFromCoord(start) val startCoord = intFromCoord(start)
new Interval(chr, startCoord, startCoord) new Interval(chr, startCoord, startCoord)
......
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